nisse-core: group modules into packages by architecture section

A pure move; behaviour unchanged.

- models (L9, L7): llm, catalog, probe, render, render_anthropic, context
- log (L7, L6): canonical, views
- state (L8): store (was state), reconcile, worker, cancel, dump
- knowledge (L10, L6.4): vault, memory
- conversation (L5): transport, matrix
- execution (L13): ssh (was execution), testing
- authority (P3, P4, L4): actions
- gitea, oplog, envfile stay at the top until each gains a second module.

Every import, monkeypatch target, script and doc reference rewritten.

Co-Authored-By: Claude Opus 5.5 (1M context) <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01J5Utyfzw7gF7UhjRDEtjTk

nisse-dev/src/nisse_dev/config.py

@@ -23,9 +23,13 @@ from typing import Any
 
 import yaml
 
-from nisse_core.llm import DEFAULT_MAX_OUTPUT_TOKENS, DEFAULT_REQUEST_TIMEOUT_S, RoleMap
-from nisse_core.matrix import MatrixConfig
-from nisse_core.vault import ACCESS, DEFAULT_IGNORE
+from nisse_core.conversation.matrix import MatrixConfig
+from nisse_core.knowledge.vault import ACCESS, DEFAULT_IGNORE
+from nisse_core.models.llm import (
+    DEFAULT_MAX_OUTPUT_TOKENS,
+    DEFAULT_REQUEST_TIMEOUT_S,
+    RoleMap,
+)
 
 DEFAULT_CONFIG_FILE = "nisse-dev.yaml"